Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hupDNA-binding protein HU. (114 aa)    
Predicted Functional Partners:
dnaG
DNA primase.
 
  
 0.893
dnaA
Chromosomal replication initiator protein DnaA.
  
 
 0.892
alr
Replicative DNA helicase.
    
 0.882
priA
Primosomal protein N'.
    
  0.860
S23_03550
50S ribosomal protein L19.
  
   0.854
ihfA
Integration host factor alpha subunit.
  
0.852
topA
DNA topoisomerase I.
    
 0.847
S23_41740
Acyl carrier protein.
  
 
 0.834
S23_05520
Helicase-like protein.
    
  0.811
recQ
ATP-dependent DNA helicase.
    
  0.811
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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