Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nthBNitrile hydratase subunit beta. (219 aa)    
Predicted Functional Partners:
nthA
Nitrile hydratase subunit alpha.
 
 
 0.999
S23_36790
Hypothetical protein.
 
   
 0.966
S23_51010
Probable amidase.
 
  
  0.942
S23_06030
Amidase.
 
  
  0.941
S23_15800
Amidase.
    
 0.935
S23_08880
Putative amidase.
    
  0.933
amiC
Putative amidase AmiC.
    
  0.933
S23_68380
Aliphatic amidase.
  
  
 0.916
S23_50520
Putative Glu-tRNA amidotransferase.
    
  0.906
S23_30640
Nitrilase.
     
 0.889
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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