Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_44500Hypothetical protein. (265 aa)    
Predicted Functional Partners:
S23_44020
Hypothetical protein.
 
  
 0.672
pssA-2
Phosphatidylserine synthase.
       0.640
ilvH
Acetolactate synthase 3 regulatory subunit.
     
  0.575
S23_29520
Putative glyoxalase.
 
     0.564
S23_08770
Hypothetical protein.
 
  
 0.517
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase.
     
 0.510
S23_08780
Hypothetical protein.
 
  
 0.472
S23_44520
Phosphatidylserine decarboxylase.
       0.455
S23_26680
Hypothetical protein.
  
     0.451
mscL
Mechanosensitive channel-like protein.
   
  
 0.416
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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