Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_44540Hypothetical protein. (201 aa)    
Predicted Functional Partners:
S23_15710
Putative glutamate synthase small subunit.
  
 
  0.698
thyA
Thymidylate synthase.
  
 
  0.680
S23_40100
Vitamin B12-dependent ribonucleotide reductase.
 
    0.641
S23_44530
ABC transporter.
       0.617
apt
Adenine phosphoribosyltransferase.
 
  
 0.599
S23_27670
Hypothetical protein.
  
    0.583
surE
5'-nucleotidase SurE.
    
 0.572
S23_68530
5'-methylthioadenosine phosphorylase.
    
  0.565
S23_33290
Uridylate kinase.
    
 0.564
tmk
Thymydilate kinase.
    
 0.562
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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