Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S23_44690Transcriptional regulatory protein. (312 aa)    
Predicted Functional Partners:
S23_23230
Transcriptional regulatory protein LysR family.
  
     0.743
S23_06820
Transcriptional regulatory protein LysR family.
  
     0.736
S23_43230
Transcription regulator LysR family.
  
     0.730
S23_66100
Transcriptional regulatory protein LysR family.
  
     0.730
S23_07860
Transcriptional regulatory protein LysR family.
  
     0.725
S23_14900
Transcriptional regulatory protein LysR family.
  
     0.723
S23_46770
Transcriptional regulatory protein LysR family.
  
     0.720
S23_06210
Transcriptional regulatory protein LysR family.
  
     0.715
S23_62100
Putative transcriptional regulatory protein LysR family.
  
     0.713
S23_11320
Transcriptional regulatory protein LysR family.
  
     0.712
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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