STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S23_51130Hypothetical protein. (406 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase.
     
  0.708
S23_51120
Uncharacterized oxidoreductase YuiH.
       0.703
S23_36470
PfkB family carbohydrate kinase.
   
  
 0.675
kgtP
Alpha-ketoglutarate permease.
       0.647
S23_12640
Cation-transporting ATPase.
  
 
  0.592
S23_44310
Putative cation-transporting ATPase.
  
 
  0.592
pdhB
Pyruvate dehydrogenase subunit beta.
    
  0.591
S23_51100
Probable cytochrome P450.
    
  0.587
S23_19070
Hypothetical protein; 319 amino acids.
 
 
 0.571
S23_59710
Hydrolase.
 
 
 0.571
Your Current Organism:
Bradyrhizobium sp. S23321
NCBI taxonomy Id: 335659
Other names: B. sp. S23321, alpha proteobacterium S23321
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.