STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH48226.1Imidazolonepropionase. (391 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.952
SDH94680.1
Histidine ammonia-lyase.
  
  
 0.804
SDH48261.1
Hypothetical protein.
       0.783
SDI02895.1
Agmatinase; Belongs to the arginase family.
  
 
 0.672
SDH48192.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.556
SDH48156.1
MOSC domain-containing protein YiiM.
       0.508
SDH94552.1
Formiminoglutamate deiminase.
    
 0.465
SDH71957.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.429
SDI13002.1
Formiminotetrahydrofolate cyclodeaminase.
  
 
  0.422
Your Current Organism:
Arthrobacter subterraneus
NCBI taxonomy Id: 335973
Other names: A. subterraneus, Arthrobacter subterraneus Chang et al. 2008, DSM 17585, KCTC 9997, strain CH7
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