STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI14477.1Transcriptional regulator, BadM/Rrf2 family. (149 aa)    
Predicted Functional Partners:
SDI14451.1
Nitric oxide dioxygenase; Belongs to the globin family.
 
   
 0.935
SDH36598.1
Cysteine desulfurase.
  
 
 0.825
SDH83843.1
Cysteine desulfurase.
  
 
 0.825
SDI25654.1
Nitrogen fixation protein NifU.
  
  
 0.710
SDI14508.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
  
 0.666
SDI14638.1
Respiratory nitrate reductase alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.605
SDI14562.1
Respiratory nitrate reductase chaperone NarJ.
 
     0.591
SDI11384.1
Ferredoxin-NADP reductase.
 
  
 0.575
SDI14609.1
Respiratory nitrate reductase beta subunit.
     
 0.564
SDI14539.1
Nitrate reductase gamma subunit.
     
 0.559
Your Current Organism:
Arthrobacter subterraneus
NCBI taxonomy Id: 335973
Other names: A. subterraneus, Arthrobacter subterraneus Chang et al. 2008, DSM 17585, KCTC 9997, strain CH7
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