STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP38863.1Glycosyltransferase family 25 (LPS biosynthesis protein). (251 aa)    
Predicted Functional Partners:
SDP38911.1
Glycosyl transferase, family 25.
 
     0.861
SDP38884.1
Glycosyl transferases group 1.
 
     0.646
SDP38933.1
YD repeat-containing protein.
  
     0.492
SDP76218.1
Hypothetical protein.
  
     0.466
SDP14008.1
Chromosome partitioning protein, ParB family.
  
     0.424
Your Current Organism:
Sulfitobacter litoralis
NCBI taxonomy Id: 335975
Other names: DSM 17584, KCTC 12521, S. litoralis, Sulfitobacter litoralis Park et al. 2007, strain Iso 3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.