STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP65031.1CRP/FNR family transcriptional regulator, anaerobic regulatory protein. (257 aa)    
Predicted Functional Partners:
SDO22622.1
Glutamate synthase (NADPH) large subunit.
    
 0.916
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.877
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.870
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.869
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.847
SDP65656.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.768
SDP32841.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.762
SDP44062.1
TspO/MBR family protein.
   
 0.711
SDP64953.1
Cytochrome c oxidase cbb3-type subunit 4.
 
  
 0.710
SDO67652.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
    
  0.699
Your Current Organism:
Sulfitobacter litoralis
NCBI taxonomy Id: 335975
Other names: DSM 17584, KCTC 12521, S. litoralis, Sulfitobacter litoralis Park et al. 2007, strain Iso 3
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