Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ddlB | ftsA | SAR11_0021 | SAR11_0019 | D-alanine--D-alanine ligase B; Cell wall formation. | Cell division protein FtsA. | 0.967 |
ddlB | ftsI | SAR11_0021 | SAR11_0029 | D-alanine--D-alanine ligase B; Cell wall formation. | Cell division protein FtsI; Penicillin-binding protein 2. | 0.944 |
ddlB | ftsQ | SAR11_0021 | SAR11_0020 | D-alanine--D-alanine ligase B; Cell wall formation. | Cell division protein FtsQ; FtsQ. | 0.967 |
ddlB | ftsW | SAR11_0021 | SAR11_0025 | D-alanine--D-alanine ligase B; Cell wall formation. | Cell division protein FtsW; Belongs to the SEDS family. | 0.963 |
ddlB | mraY | SAR11_0021 | SAR11_0027 | D-alanine--D-alanine ligase B; Cell wall formation. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.972 |
ddlB | murB | SAR11_0021 | SAR11_0022 | D-alanine--D-alanine ligase B; Cell wall formation. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.994 |
ddlB | murC | SAR11_0021 | SAR11_0023 | D-alanine--D-alanine ligase B; Cell wall formation. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.999 |
ddlB | murD | SAR11_0021 | SAR11_0026 | D-alanine--D-alanine ligase B; Cell wall formation. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Belongs to the MurCDEF family. | 0.979 |
ddlB | murEF | SAR11_0021 | SAR11_0028 | D-alanine--D-alanine ligase B; Cell wall formation. | UDP-N-acetylmuramoylalanyl-D-glutamate; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.998 |
ddlB | murG | SAR11_0021 | SAR11_0024 | D-alanine--D-alanine ligase B; Cell wall formation. | UDP-N-acetylglucosamine; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.980 |
ftsA | ddlB | SAR11_0019 | SAR11_0021 | Cell division protein FtsA. | D-alanine--D-alanine ligase B; Cell wall formation. | 0.967 |
ftsA | ftsI | SAR11_0019 | SAR11_0029 | Cell division protein FtsA. | Cell division protein FtsI; Penicillin-binding protein 2. | 0.931 |
ftsA | ftsQ | SAR11_0019 | SAR11_0020 | Cell division protein FtsA. | Cell division protein FtsQ; FtsQ. | 0.991 |
ftsA | ftsW | SAR11_0019 | SAR11_0025 | Cell division protein FtsA. | Cell division protein FtsW; Belongs to the SEDS family. | 0.959 |
ftsA | mraY | SAR11_0019 | SAR11_0027 | Cell division protein FtsA. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.846 |
ftsA | murB | SAR11_0019 | SAR11_0022 | Cell division protein FtsA. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.854 |
ftsA | murC | SAR11_0019 | SAR11_0023 | Cell division protein FtsA. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.931 |
ftsA | murD | SAR11_0019 | SAR11_0026 | Cell division protein FtsA. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Belongs to the MurCDEF family. | 0.913 |
ftsA | murEF | SAR11_0019 | SAR11_0028 | Cell division protein FtsA. | UDP-N-acetylmuramoylalanyl-D-glutamate; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.968 |
ftsA | murG | SAR11_0019 | SAR11_0024 | Cell division protein FtsA. | UDP-N-acetylglucosamine; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.902 |
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