STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilOType 4 fimbrial biogenesis protein PilO. (225 aa)    
Predicted Functional Partners:
pilC
Type II Secretion System PilC; Type IV fimbrial assembly protein, pilC.
   
 
 0.959
pilQ
Type IV fimbrial biogenesis protein PilQ.
  
 
 0.933
pilMN
Type II Secretion; Type IV pilus biogenesis protein, PilM/PilN fusion.
  
 
 0.927
pilB
Type II Secretion System PilB; Type IV pilus assembly protein (ATPase) PilB.
  
 
 0.923
pilP
Type 4 fimbrial biogenesis protein PilP.
       0.773
pilT
Type IV pilus retraction ATPase PilT.
  
  
 0.412
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.