STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbUSigma factor sigB regulation protein; GAF photoreceptor fused to PP2C. (448 aa)    
Predicted Functional Partners:
AAZ20880.1
Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.999
spoIIA
Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.999
sigB
Probable sigma factor SigB regulation protein.
 
 
0.995
AAZ20874.1
Ammonium transporter family protein.
 
  
0.994
rsbW
Anti-sigma regulatory factor (Ser/Thr protein kinase).
 
 
 0.939
ntrX
Nitrogen assimilation regulatory protein ntrX.
 
  
 0.610
pild
Type II Secretion PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.566
phoB
Phosphate regulatory protein.
 
 
 0.562
petR
Two-component system; OmpR family, response regulator, ompR.
 
 
 0.554
chvI
Two-component system response regulator.
  
 
 0.554
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.