STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase. (314 aa)    
Predicted Functional Partners:
trxB2
Thioredoxin-disulfide reductase.
  
  
 
0.909
csdB
Selenocysteine lyase chain A; Similar to Escherichia coli csdB, nifs Family; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.903
trxA
Thioredoxin 1; Belongs to the thioredoxin family.
 
 
 0.858
AAZ20902.1
Possible NAD dependent epimerase/dehydratase protein.
       0.636
fdxB
Ferredoxin; Similar to 2Fe-2S Caulobacter crescentus CB15.
   
 
 0.613
AAZ20900.1
Predicted nucleoside-diphosphate-sugar epimerase.
       0.584
AAZ20899.1
Unknown protein.
       0.567
aprA
Adenylyl-sulfate reductase chain A.
      
 0.504
rpsA
30S ribosomal protein S1.
 
    0.502
aprM
Adenylylsulfate reductase membrane anchor.
      
 0.489
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.