Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AAZ20906.1 | aatA | SAR11_0082 | SAR11_0080 | Probable short-chain dehydrogenase. | Aspartate transaminase. | 0.609 |
AAZ20906.1 | folB | SAR11_0082 | SAR11_0083 | Probable short-chain dehydrogenase. | Dihydroneopterin aldolase. | 0.773 |
AAZ20906.1 | pgsA | SAR11_0082 | SAR11_0085 | Probable short-chain dehydrogenase. | CDP-diacylglycerol; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.793 |
AAZ20906.1 | uvrB | SAR11_0082 | SAR11_0081 | Probable short-chain dehydrogenase. | Excinuclease ABC chain B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate an [...] | 0.775 |
AAZ20906.1 | uvrC | SAR11_0082 | SAR11_0084 | Probable short-chain dehydrogenase. | Excinuclease ABC chain C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.803 |
AAZ20906.1 | ytoQ | SAR11_0082 | SAR11_0079 | Probable short-chain dehydrogenase. | Hypothetical protein ytoQ. | 0.564 |
aatA | AAZ20906.1 | SAR11_0080 | SAR11_0082 | Aspartate transaminase. | Probable short-chain dehydrogenase. | 0.609 |
aatA | folB | SAR11_0080 | SAR11_0083 | Aspartate transaminase. | Dihydroneopterin aldolase. | 0.564 |
aatA | pgsA | SAR11_0080 | SAR11_0085 | Aspartate transaminase. | CDP-diacylglycerol; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.570 |
aatA | uvrB | SAR11_0080 | SAR11_0081 | Aspartate transaminase. | Excinuclease ABC chain B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate an [...] | 0.584 |
aatA | uvrC | SAR11_0080 | SAR11_0084 | Aspartate transaminase. | Excinuclease ABC chain C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.570 |
aatA | ytoQ | SAR11_0080 | SAR11_0079 | Aspartate transaminase. | Hypothetical protein ytoQ. | 0.773 |
folB | AAZ20906.1 | SAR11_0083 | SAR11_0082 | Dihydroneopterin aldolase. | Probable short-chain dehydrogenase. | 0.773 |
folB | aatA | SAR11_0083 | SAR11_0080 | Dihydroneopterin aldolase. | Aspartate transaminase. | 0.564 |
folB | folC | SAR11_0083 | SAR11_0485 | Dihydroneopterin aldolase. | FolC bifunctional protein (Folylpolyglutamate synthase/Dihydrofolate synthase); Belongs to the folylpolyglutamate synthase family. | 0.564 |
folB | folE | SAR11_0083 | SAR11_1245 | Dihydroneopterin aldolase. | GTP cyclohydrolase I. | 0.976 |
folB | folK | SAR11_0083 | SAR11_1059 | Dihydroneopterin aldolase. | 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). | 0.995 |
folB | folP | SAR11_0083 | SAR11_0602 | Dihydroneopterin aldolase. | Dihydropteroate synthase-like protein; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | 0.995 |
folB | pgsA | SAR11_0083 | SAR11_0085 | Dihydroneopterin aldolase. | CDP-diacylglycerol; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.797 |
folB | uvrB | SAR11_0083 | SAR11_0081 | Dihydroneopterin aldolase. | Excinuclease ABC chain B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate an [...] | 0.778 |
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