STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ21185.1Bipartite response regulator; C-terminal effector. (193 aa)    
Predicted Functional Partners:
fdsB
NAD-dependent formate dehydrogenase beta subunit.
   
 
 0.835
AAZ20874.1
Ammonium transporter family protein.
  
 
 0.817
AAZ21766.1
Transcription regulator.
  
  
 0.765
AAZ21534.1
Predicted permease YjgP/YjgQ family protein.
  
     0.713
AAZ21184.1
Conserved hypothetical protein.
 
    0.701
holA
DNA-directed DNA polymerase III; Delta subunit, holA.
  
     0.700
envZ
Osmolarity sensor protein envZ.
 
 
 0.680
regB
Sensor histidine kinase (two component sensor).
 
 
 0.653
recO
Recombination protein O; Involved in DNA repair and RecF pathway recombination.
  
     0.623
chvG
Two-component sensor histidine kinase.
 
 
 0.615
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.