STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ21493.1Short chain dehydrogenase. (253 aa)    
Predicted Functional Partners:
AAZ21492.1
Hypothetical protein.
 
  
 0.828
AAZ22093.1
Short chain dehydrogenase.
  
 
 0.751
AAZ21490.1
Similar to protein of unknown function (DUF1365).
 
  
 0.677
AAZ21489.1
Flavin containing amine oxidoreductas.
 
   
 0.602
tspo
TspO/MBR family.
  
  
 0.590
AAZ21495.1
Hypothetical protein; Similar to FAD dependent oxidoreductase family.
       0.564
AAZ20906.1
Probable short-chain dehydrogenase.
  
 
 0.537
AAZ21496.1
Hypothetical protein; Similar to COG4627: Uncharacterized protein conserved in bacteria.
       0.500
AAZ21125.1
Short chain dehydrogenase; Unknown specificity.
  
 
 0.492
fadB
3-hydroxyacyl-CoA dehydrogenase.
   
  
 0.441
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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