STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ21556.1Alpha/beta hydrolase. (218 aa)    
Predicted Functional Partners:
sufB
FeS assembly protein SufB.
     
 0.593
sufC
FeS assembly ATPase SufC.
     
 0.589
sufD
FeS assembly protein sufD.
     
 0.589
sufA
Transcriptional regulator.
       0.582
csdB
Selenocysteine lyase chain A; Similar to Escherichia coli csdB, nifs Family; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
       0.582
paaD
Possible phenylacetic acid degradation protein.
       0.582
hesB
hesB protein; Belongs to the HesB/IscA family.
       0.582
sufE
Putative nifU-like protein; Involved in Fe-S cluster formation.
       0.545
AAZ21400.1
Similar to protein of unknown function (DUF1013).
  
     0.451
comL
Putative competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.446
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.