STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ21591.1Short chain dehydrogenase; Unknown specificity. (253 aa)    
Predicted Functional Partners:
gnl
Gluconolactonase.
 
 
 0.984
edd
6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
 
     0.799
ucpA
Oxidoreductase.
 
    
0.789
AAZ21588.1
ABC-type sugar transport system; Permease component.
  
    0.774
AAZ21589.1
ABC-type sugar transport system; Permease component.
       0.773
malK
Sugar ABC transporter; ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
hpcE
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy.
 
   0.688
AAZ21084.1
Amidase; Unknown specificity; similar to gatA.
 
 
    0.643
AAZ21125.1
Short chain dehydrogenase; Unknown specificity.
  
     0.628
AAZ21587.1
Probable binding protein component of ABC sugar transporter.
  
    0.586
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.