STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ21742.1Similar to COG1538: Outer membrane protein; Similar to TolC by Fugue analysis. (632 aa)    
Predicted Functional Partners:
AAZ21746.1
AcrB-like protein; Similar to COG0845: Membrane-fusion protein.
 
 
 0.898
AAZ21747.1
Peptidase M50.
 
 
 0.898
acrA
AcrA-like protein; Similar to COG0845: Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.885
tpiA
Triosephosphate isomerase (tim).
  
   0.569
AAZ21744.1
Hypothetical protein; VCBS domain, Interpro ID: ipr010221; similar to COG3468: Type V secretory pathway, adhesin AidA.
 
  
 0.560
secG
Preprotein translocase SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
     
 0.534
AAZ21012.1
AcrB/AcrD/AcrF family protein (Acriflavin resistance); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.526
AAZ21492.1
Hypothetical protein.
  
 
 0.526
yhil
HlyD family-related protein; YhiI; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.515
trpC
Indole-3-glycerol phosphate synthase/anthranilate isomerase; Belongs to the TrpC family.
   
   0.444
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.