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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnPABC transporter permease component. (226 aa)    
Predicted Functional Partners:
yhdZ
General L-amino acid transport ATP-binding protein.
     0.977
pheC
Cyclohexadienyl dehydratase; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.925
ycfV
ABC transporter ATP-binding protein.
 
 
  
 0.902
AAZ21666.1
Probable ATP-binding component of ABC transporter.
 
      0.897
proV
Glycine betaine/L-proline transport ATP-binding protein.
 
    
 0.872
occT
ABC transporter; Periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.853
potA
Spermidine/putrescine transport ATP-binding protein pota; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 
  0.812
pstB
Phosphate ABC transporter; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
    
 0.806
AAZ21875.1
GCN5-related N-acetyltransferase.
       0.773
braG
Probable high-affinity branched-chain amino acid transport ATP-binding protein.
 
    
 0.730
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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