STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amsKGlycosyl transferase. (341 aa)    
Predicted Functional Partners:
capM
Glycosyl transferase; Group 1 family protein.
 
     0.722
AAZ22006.1
Conserved hypothetical protein; Similar to Nitrosomonas europaea ATCC 19718 emb|CAD84691.1.
  
    0.602
rfaG
Glycosyl transferase family 28.
  
     0.600
rfaD
ADP-L-glycero-D-mannoheptose-6-epimerase.
  
    0.589
AAZ21377.1
Glycosyl transferase.
  
     0.531
AAZ21378.1
Glycosyl transferase family.
  
     0.514
rfbB
dTDPglucose 4,6-dehydratase.
 
  
 0.495
AAZ22005.1
Bacterial transferase family protein.
       0.449
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.