STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occQABC transporter; Permease protein. (230 aa)    
Predicted Functional Partners:
occT
ABC transporter; Periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 0.994
oocM
Octopine-like transport system permease protein oocM.
 
 
0.975
yhdZ
General L-amino acid transport ATP-binding protein.
 
     0.751
pheC
Cyclohexadienyl dehydratase; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.722
glnP
ABC transporter permease component.
 
 
 
0.559
yhdX
Amino acid ABC transporter; Similar to permease protein VC1361 Vibrio cholerae (strain N16961).
  
  
  0.550
yhdY
Similar to amino-acid ABC transporter permease protein yhdY.
 
 
 
0.514
speE
Spermine/spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
       0.490
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.