Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sfuBiron(III) ABC transporter; Similar to permease protein VC0609 Vibrio cholerae. (538 aa)    
Predicted Functional Partners:
sfuA
iron(III) ABC transporter; Similar to ATP-binding protein Vibrio vulnificus YJ016 dbj|BAC95508.1.
 0.996
sfuC
Probable iron-uptake ABC transport system periplasmic iron-binding protein.
 
 
 0.996
azlC
AzlC protein.
       0.723
potA
Spermidine/putrescine transport ATP-binding protein pota; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 
 0.639
AAZ22038.1
Domain of unknown function (DUF931).
       0.602
AAZ22037.1
Conserved hypothetical protein.
  
    0.559
AAZ22036.1
Thioredoxin.
       0.461
AAZ22043.1
Unknown.
       0.400
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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