STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfuCProbable iron-uptake ABC transport system periplasmic iron-binding protein. (339 aa)    
Predicted Functional Partners:
sfuB
iron(III) ABC transporter; Similar to permease protein VC0609 Vibrio cholerae.
 
 
 0.998
sfuA
iron(III) ABC transporter; Similar to ATP-binding protein Vibrio vulnificus YJ016 dbj|BAC95508.1.
 
 
 0.991
azlC
AzlC protein.
  
    0.537
AAZ22043.1
Unknown.
       0.527
proX
Hypothetical protein; Periplasmic components; similar to COG2113: ABC-type proline/glycine betaine transport systems.
  
  
 0.467
cspE
Cold shock protein.
   
  
 0.463
cspL
Cold shock DNA-binding domain protein.
   
  
 0.463
rbr
Rubrerythrin.
      
 0.461
AAZ22038.1
Domain of unknown function (DUF931).
       0.451
aceA
Isocitrate lyase.
       0.446
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.