STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAZ22094.1TRAP-type bacterial extracellular solute-binding protein; Similar to COG4663: TRAP-type mannitol/chloroaromatic compound transport system. (358 aa)    
Predicted Functional Partners:
dctQ
Tripartite ATP-independent periplasmic.
 
 
  0.988
dctM
TrapT family, dctM subunit.
 
 
  0.987
ssdH
Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
  
     0.581
AAZ22097.1
Uncharacterized protein family UPF015.
       0.487
gpsA
Glycerol-3-phosphate dehydrogenase (NAD); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.487
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.