STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhtBLysE type translocator; Possible threonine efflux pump. (204 aa)    
Predicted Functional Partners:
livJ2
Leu/Ile/Val-binding protein precursor.
   
   0.578
livM
Branched-chain amino acid transport system/permease component; Belongs to the binding-protein-dependent transport system permease family.
     
 0.566
AAZ22166.1
Conserved hypothetical protein.
       0.531
AAZ22167.1
Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.531
yggA
Lysine efflux pump.
  
   
 0.488
babIM
Site-specific DNA methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
      
 0.461
pntA
Alanine dehydrogenase/PNT; C-terminal.
      
 0.461
AAZ21457.1
Conserved hypothetical protein.
      
 0.461
Your Current Organism:
Pelagibacter ubique HTCC1062
NCBI taxonomy Id: 335992
Other names: C. Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique HTCC1062, Candidatus Pelagibacter ubique str. HTCC1062, Candidatus Pelagibacter ubique strain HTCC1062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.