Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SCY23755.1 | SCY23790.1 | SAMN05660710_01004 | SAMN05660710_01005 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SCY23755.1 | SCY23841.1 | SAMN05660710_01004 | SAMN05660710_01006 | Hypothetical protein. | Core-2/I-Branching enzyme. | 0.773 |
SCY23755.1 | SCY23888.1 | SAMN05660710_01004 | SAMN05660710_01007 | Hypothetical protein. | Glycosyl transferase family 2. | 0.773 |
SCY23755.1 | SCY23924.1 | SAMN05660710_01004 | SAMN05660710_01008 | Hypothetical protein. | Glycosyl transferase family 2. | 0.539 |
SCY23755.1 | SCY23951.1 | SAMN05660710_01004 | SAMN05660710_01009 | Hypothetical protein. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.539 |
SCY23755.1 | SCY23983.1 | SAMN05660710_01004 | SAMN05660710_01010 | Hypothetical protein. | UDP-glucose pyrophosphorylase. | 0.539 |
SCY23755.1 | SCY27568.1 | SAMN05660710_01004 | SAMN05660710_01129 | Hypothetical protein. | Threonine/homoserine/homoserine lactone efflux protein. | 0.424 |
SCY23755.1 | SCY27628.1 | SAMN05660710_01004 | SAMN05660710_01131 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.424 |
SCY23755.1 | recF | SAMN05660710_01004 | SAMN05660710_01130 | Hypothetical protein. | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.426 |
SCY23790.1 | SCY23755.1 | SAMN05660710_01005 | SAMN05660710_01004 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SCY23790.1 | SCY23841.1 | SAMN05660710_01005 | SAMN05660710_01006 | Hypothetical protein. | Core-2/I-Branching enzyme. | 0.968 |
SCY23790.1 | SCY23888.1 | SAMN05660710_01005 | SAMN05660710_01007 | Hypothetical protein. | Glycosyl transferase family 2. | 0.949 |
SCY23790.1 | SCY23924.1 | SAMN05660710_01005 | SAMN05660710_01008 | Hypothetical protein. | Glycosyl transferase family 2. | 0.896 |
SCY23790.1 | SCY23951.1 | SAMN05660710_01005 | SAMN05660710_01009 | Hypothetical protein. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.574 |
SCY23790.1 | SCY23983.1 | SAMN05660710_01005 | SAMN05660710_01010 | Hypothetical protein. | UDP-glucose pyrophosphorylase. | 0.661 |
SCY23841.1 | SCY23755.1 | SAMN05660710_01006 | SAMN05660710_01004 | Core-2/I-Branching enzyme. | Hypothetical protein. | 0.773 |
SCY23841.1 | SCY23790.1 | SAMN05660710_01006 | SAMN05660710_01005 | Core-2/I-Branching enzyme. | Hypothetical protein. | 0.968 |
SCY23841.1 | SCY23888.1 | SAMN05660710_01006 | SAMN05660710_01007 | Core-2/I-Branching enzyme. | Glycosyl transferase family 2. | 0.952 |
SCY23841.1 | SCY23924.1 | SAMN05660710_01006 | SAMN05660710_01008 | Core-2/I-Branching enzyme. | Glycosyl transferase family 2. | 0.902 |
SCY23841.1 | SCY23951.1 | SAMN05660710_01006 | SAMN05660710_01009 | Core-2/I-Branching enzyme. | UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. | 0.632 |
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