STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY43323.1UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family. (285 aa)    
Predicted Functional Partners:
atpD
F-type H+-transporting ATPase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
  0.784
SCY53773.1
Acyl transferase domain-containing protein.
  
  
 0.655
SCX90353.1
D-lactate dehydrogenase (cytochrome).
    
 0.640
SCY12761.1
Glycolate oxidase FAD binding subunit.
    
 0.640
SCY12793.1
Glycolate oxidase.
    
 0.640
SCY61008.1
FAD/FMN-containing dehydrogenase.
    
 0.640
SCY86262.1
FAD/FMN-containing dehydrogenase.
    
 0.640
SCY43355.1
Hypothetical protein.
       0.556
SCY90649.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.554
SCY69196.1
Phytoene desaturase.
  
 
 0.525
Your Current Organism:
Paracoccus tibetensis
NCBI taxonomy Id: 336292
Other names: CGMCC 1.8925, NBRC 105667, P. tibetensis, Paracoccus sp. Tibet-S9a3, Paracoccus tibetensis Zhu et al. 2013, strain Tibet-S9a3
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