STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCY59697.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (254 aa)    
Predicted Functional Partners:
SCY59721.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SCY72671.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.997
SCY49038.1
Phospholipid transport system substrate-binding protein.
 
 
 0.965
SCY59674.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.851
SCY23153.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
 0.838
SCY81544.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
   
 0.838
SCY88877.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
 0.838
SCY49065.1
Phospholipid-binding lipoprotein MlaA.
 
   
 0.760
SCY53069.1
Lipopolysaccharide export system ATP-binding protein.
 
  
  0.663
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.655
Your Current Organism:
Paracoccus tibetensis
NCBI taxonomy Id: 336292
Other names: CGMCC 1.8925, NBRC 105667, P. tibetensis, Paracoccus sp. Tibet-S9a3, Paracoccus tibetensis Zhu et al. 2013, strain Tibet-S9a3
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