STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY71583.1HlyD family secretion protein. (438 aa)    
Predicted Functional Partners:
SCY71596.1
ATP-binding cassette, subfamily C.
  
 0.952
SCX86922.1
Outer membrane protein.
  
 0.832
SCY71613.1
Ca2+-binding protein, RTX toxin-related.
 
  
 0.824
SCY12392.1
ATP-binding cassette, subfamily C.
  
 0.799
SCY49091.1
ATP-binding cassette, subfamily C.
  
 0.799
SCY24453.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
 
  
 0.702
SCY76771.1
Hemolysin-type calcium-binding repeat-containing protein.
 
  
 0.666
SCY42241.1
Ca2+-binding protein, RTX toxin-related.
 
  
 0.653
SCY88907.1
Type I secretion C-terminal target domain (VC_A0849 subclass).
 
  
 0.634
SCY71325.1
Putative ABC transport system permease protein.
  
  
 0.591
Your Current Organism:
Paracoccus tibetensis
NCBI taxonomy Id: 336292
Other names: CGMCC 1.8925, NBRC 105667, P. tibetensis, Paracoccus sp. Tibet-S9a3, Paracoccus tibetensis Zhu et al. 2013, strain Tibet-S9a3
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