STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY90718.1Sensors of blue-light using FAD. (141 aa)    
Predicted Functional Partners:
SCY12517.1
PAS/PAC sensor hybrid histidine kinase.
  
 0.906
SCY68587.1
PAS domain S-box-containing protein.
  
 0.906
SCY42585.1
PAS domain S-box-containing protein.
  
 
 0.833
rpoD
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.792
SCX94508.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
  
 0.790
SCY66195.1
PAS domain S-box-containing protein.
  
 0.779
SCY94056.1
PAS domain S-box-containing protein.
  
 0.779
SCY90691.1
Secondary thiamine-phosphate synthase enzyme.
       0.601
SCY90703.1
DNA recombination protein RmuC.
       0.601
SCY60397.1
Two-component system, cell cycle response regulator.
    
 0.550
Your Current Organism:
Paracoccus tibetensis
NCBI taxonomy Id: 336292
Other names: CGMCC 1.8925, NBRC 105667, P. tibetensis, Paracoccus sp. Tibet-S9a3, Paracoccus tibetensis Zhu et al. 2013, strain Tibet-S9a3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.