STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY95772.14-hydroxyphenylpyruvate dioxygenase. (312 aa)    
Predicted Functional Partners:
SCY70948.1
Xylose isomerase-like TIM barrel.
  
  0.983
SCY74244.1
Homogentisate 1,2-dioxygenase.
 
 0.929
SCY94290.1
Shikimate dehydrogenase.
 
 
 0.837
SCY59391.1
methylmalonyl-CoA mutase.
    
 0.833
SCY78802.1
Aromatic-amino-acid transaminase.
  
 
 0.729
SCY09723.1
4-hydroxyphenylpyruvate dioxygenase.
  
  
 
0.678
SCY71088.1
Shikimate dehydrogenase.
 
 
 0.677
SCY67625.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
    
  0.652
SCY53773.1
Acyl transferase domain-containing protein.
  
 
 0.643
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
  0.636
Your Current Organism:
Paracoccus tibetensis
NCBI taxonomy Id: 336292
Other names: CGMCC 1.8925, NBRC 105667, P. tibetensis, Paracoccus sp. Tibet-S9a3, Paracoccus tibetensis Zhu et al. 2013, strain Tibet-S9a3
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