STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG75796.1TldD protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)    
Predicted Functional Partners:
KRG75795.1
Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.942
pmbA
Peptidase PmbA; Protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.893
KRG75794.1
Twin-arginine translocation pathway signal; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.887
KRG75790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.880
KRG75789.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.874
KRG75791.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
KRG75792.1
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
KRG75797.1
TldD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.552
KRG75793.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.508
Your Current Organism:
Stenotrophomonas ginsengisoli
NCBI taxonomy Id: 336566
Other names: DSM 24757, KCTC 12539, NBRC 101154, Stenotrophomonas ginsengisoli Kim et al. 2010, strain DCY01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.