F9WXS0_ZYMTI protein (Zymoseptoria tritici IPO323)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F9WXS0_ZYMTI

NodB homology domain-containing protein. (240 aa)

Predicted Functional Partners:

F9XP02_ZYMTI

0.778

F9XJB9_ZYMTI

0.566

MgGpb1

0.539

F9XDZ8_ZYMTI

0.507

F9XQH3_ZYMTI

0.467

F9X4G0_ZYMTI

0.466

F9XCD7_ZYMTI

0.462

F9XPB7_ZYMTI

0.462

F9XK80_ZYMTI

0.453

F9X5C6_ZYMTI

0.438

Your Current Organism:

Zymoseptoria tritici IPO323

NCBI taxonomy Id: 336722
Other names: Mycosphaerella graminicola IPO323, Z. tritici IPO323

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F9WXS0_ZYMTI	F9X4G0_ZYMTI	F9WXS0	F9X4G0	NodB homology domain-containing protein.	Uncharacterized protein.	0.466
F9WXS0_ZYMTI	F9X5C6_ZYMTI	F9WXS0	F9X5C6	NodB homology domain-containing protein.	Uncharacterized protein.	0.438
F9WXS0_ZYMTI	F9XCD7_ZYMTI	F9WXS0	F9XCD7	NodB homology domain-containing protein.	Protein kinase domain-containing protein.	0.462
F9WXS0_ZYMTI	F9XDZ8_ZYMTI	F9WXS0	F9XDZ8	NodB homology domain-containing protein.	Arginase; Belongs to the arginase family.	0.507
F9WXS0_ZYMTI	F9XJB9_ZYMTI	F9WXS0	F9XJB9	NodB homology domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.566
F9WXS0_ZYMTI	F9XK80_ZYMTI	F9WXS0	F9XK80	NodB homology domain-containing protein.	RPA_C domain-containing protein.	0.453
F9WXS0_ZYMTI	F9XP02_ZYMTI	F9WXS0	F9XP02	NodB homology domain-containing protein.	MHYT domain-containing protein.	0.778
F9WXS0_ZYMTI	F9XPB7_ZYMTI	F9WXS0	F9XPB7	NodB homology domain-containing protein.	Uncharacterized protein.	0.462
F9WXS0_ZYMTI	F9XQH3_ZYMTI	F9WXS0	F9XQH3	NodB homology domain-containing protein.	Uncharacterized protein.	0.467
F9WXS0_ZYMTI	MgGpb1	F9WXS0	F9X1T0	NodB homology domain-containing protein.	G-protein beta subunit.	0.539
F9X4G0_ZYMTI	F9WXS0_ZYMTI	F9X4G0	F9WXS0	Uncharacterized protein.	NodB homology domain-containing protein.	0.466
F9X4G0_ZYMTI	F9XP02_ZYMTI	F9X4G0	F9XP02	Uncharacterized protein.	MHYT domain-containing protein.	0.429
F9X5C6_ZYMTI	F9WXS0_ZYMTI	F9X5C6	F9WXS0	Uncharacterized protein.	NodB homology domain-containing protein.	0.438
F9X5C6_ZYMTI	F9XCD7_ZYMTI	F9X5C6	F9XCD7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.438
F9X5C6_ZYMTI	F9XPB7_ZYMTI	F9X5C6	F9XPB7	Uncharacterized protein.	Uncharacterized protein.	0.438
F9XCD7_ZYMTI	F9WXS0_ZYMTI	F9XCD7	F9WXS0	Protein kinase domain-containing protein.	NodB homology domain-containing protein.	0.462
F9XCD7_ZYMTI	F9X5C6_ZYMTI	F9XCD7	F9X5C6	Protein kinase domain-containing protein.	Uncharacterized protein.	0.438
F9XCD7_ZYMTI	F9XP02_ZYMTI	F9XCD7	F9XP02	Protein kinase domain-containing protein.	MHYT domain-containing protein.	0.639
F9XCD7_ZYMTI	MgGpb1	F9XCD7	F9X1T0	Protein kinase domain-containing protein.	G-protein beta subunit.	0.407
F9XDZ8_ZYMTI	F9WXS0_ZYMTI	F9XDZ8	F9WXS0	Arginase; Belongs to the arginase family.	NodB homology domain-containing protein.	0.507