STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY44488.1Shikimate dehydrogenase. (246 aa)    
Predicted Functional Partners:
SDZ43739.1
3-phosphoshikimate 1-carboxyvinyltransferase.
 
 0.994
SDZ42554.1
Shikimate kinase.
 
 0.989
SDY71647.1
3-dehydroquinate dehydratase.
 
 0.987
SDY66753.1
Chorismate synthase.
 
 0.970
SDZ43723.1
3-dehydroquinate synthase.
 
 0.965
SDZ43694.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
 
 0.956
SDZ43711.1
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase.
 
 
 0.956
SDZ13002.1
3-dehydroquinate synthase.
 
 0.885
SDZ19183.1
Anthranilate synthase, component II.
 
 0.812
SDY50598.1
Anthranilate synthase component 2.
 
 0.811
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.