STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY46380.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
SDY46413.1
Capsule assembly protein Wzi.
       0.738
SDY42325.1
Glutamate synthase (NADH) large subunit.
    
  0.727
SDY84998.1
Competence/damage-inducible protein cinA.
  
 
  0.637
SDZ42695.1
GMP synthase (glutamine-hydrolysing).
    
  0.612
SDY41459.1
IMP dehydrogenase.
    
  0.607
SDY49958.1
Putative membrane-bound dehydrogenase domain-containing protein.
    
 
 0.602
SDZ49360.1
Outer membrane protein OmpA.
   
   0.595
SDZ42987.1
Amino acid adenylation domain-containing protein.
  
    0.564
SDZ43000.1
Amino acid adenylation domain-containing protein.
  
    0.564
SDY46347.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing).
       0.529
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.