STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY48427.1Choline dehydrogenase. (569 aa)    
Predicted Functional Partners:
SDY48397.1
Gluconate 2-dehydrogenase subunit 3.
 
  0.958
SDZ07896.1
Gluconate 2-dehydrogenase subunit 3.
 
  0.847
SDY47923.1
Gluconate 2-dehydrogenase subunit 3.
 
  0.836
SDY97789.1
Gluconate 2-dehydrogenase subunit 3.
 
  0.834
SDZ43533.1
WD-40 repeat-containing protein.
    
  0.812
SDZ52656.1
Nucleoside phosphorylase.
    
  0.812
SDZ05968.1
Galactoside O-acetyltransferase.
  
 0.684
SDZ54224.1
Tetratricopeptide repeat-containing protein.
    
 0.651
SDY44392.1
Tetratricopeptide repeat-containing protein.
    
  0.650
SDY39266.1
Tfp pilus assembly protein PilF.
    
  0.650
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.