STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY52519.1seryl-tRNA synthetase. (423 aa)    
Predicted Functional Partners:
SDZ13589.1
Methyltransferase domain-containing protein.
   
 0.885
SDZ50494.1
tRNA (guanine-N(7)-)-methyltransferase.
   
 0.885
SDY90561.1
valyl-tRNA synthetase.
  
  
 0.849
SDZ42987.1
Amino acid adenylation domain-containing protein.
   
 
 0.844
SDZ43000.1
Amino acid adenylation domain-containing protein.
   
 
 0.844
SDZ04632.1
Acyl carrier protein.
   
 
 0.830
SDZ05788.1
Acyl carrier protein.
   
 
 0.830
SDZ20485.1
Acyl carrier protein.
   
 
 0.830
SDY67451.1
phenylalanyl-tRNA synthetase, alpha subunit.
  
 
 0.818
SDY65390.1
glycyl-tRNA synthetase.
   
  
 0.768
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.