STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY75282.1Carbamoyl-phosphate synthase small subunit. (396 aa)    
Predicted Functional Partners:
SDY69961.1
Carbamoyl-phosphate synthase large subunit.
 0.999
SDZ57367.1
Aspartate carbamoyltransferase.
 
 0.999
SDY53759.1
Dihydroorotase.
 
 0.992
SDZ25929.1
ATP-grasp domain-containing protein.
  
 0.991
SDZ38676.1
Carbamoyl-phosphate synthase large subunit.
  
 0.991
SDZ07438.1
Phosphoribosylformylglycinamidine synthase.
  
 
 0.975
SDY94633.1
Dihydroorotase.
 
 0.957
SDY90682.1
Amidophosphoribosyltransferase.
 
 
 0.952
SDZ36212.1
N-succinyl-L-ornithine transcarbamylase.
  
 
 0.938
SDY54072.1
Dihydroorotate oxidase A.
 
  
 0.933
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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