STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY75958.1C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A. (555 aa)    
Predicted Functional Partners:
SDY75989.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
   0.779
SDY75935.1
Ribonuclease P protein component.
       0.775
SDY76017.1
Protein of unknown function.
       0.719
SDY75905.1
LSU ribosomal protein L34P.
       0.636
SDZ44958.1
Aspartate kinase.
    
  0.601
SDZ06344.1
Hypothetical protein.
  
  0.526
SDZ01151.1
Membrane-bound lytic murein transglycosylase D.
  
     0.508
SDZ29600.1
PKD domain-containing protein.
  
  0.497
SDZ01261.1
Tetratricopeptide repeat-containing protein.
  
     0.480
SDY65087.1
SecD/SecF fusion protein.
 
 
  0.468
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.