STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY91022.1Hypothetical protein. (359 aa)    
Predicted Functional Partners:
SDY90993.1
Peptidase family C25.
 
     0.946
SDY67750.1
Surface antigen variable number repeat-containing protein.
  
     0.775
SDY98539.1
Hypothetical protein.
  
     0.775
SDY99069.1
Hypothetical protein.
  
     0.693
SDZ00870.1
Peptidase family C25.
 
     0.685
SDZ00219.1
Hypothetical protein.
  
     0.682
SDY52252.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.633
SDY67537.1
Peptidyl-prolyl cis-trans isomerase SurA.
  
   
 0.603
SDZ36531.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.572
SDY70071.1
Lamin Tail Domain.
  
     0.524
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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