SDZ00219.1 protein (Rhodonellum ikkaensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDZ00219.1

Hypothetical protein. (276 aa)

Predicted Functional Partners:

SDZ00245.1

0.793

SDY67750.1

0.771

SDY90993.1

0.770

SDZ51803.1

0.770

SDY98539.1

0.750

SDY39649.1

0.726

SDY69047.1

0.705

SDY97711.1

0.691

SDY72326.1

0.690

SDZ04741.1

0.689

Your Current Organism:

Rhodonellum ikkaensis

NCBI taxonomy Id: 336829
Other names: R. ikkaensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY39649.1	SDY67750.1	SAMN05444412_10121	SAMN05444412_102201	AsmA-like C-terminal region.	Surface antigen variable number repeat-containing protein.	0.536
SDY39649.1	SDY72326.1	SAMN05444412_10121	SAMN05444412_102369	AsmA-like C-terminal region.	Putative aminopeptidase FrvX.	0.583
SDY39649.1	SDY90993.1	SAMN05444412_10121	SAMN05444412_103363	AsmA-like C-terminal region.	Peptidase family C25.	0.479
SDY39649.1	SDZ00219.1	SAMN05444412_10121	SAMN05444412_104257	AsmA-like C-terminal region.	Hypothetical protein.	0.726
SDY39649.1	SDZ51803.1	SAMN05444412_10121	SAMN05444412_11963	AsmA-like C-terminal region.	Glycosyltransferase involved in cell wall bisynthesis.	0.558
SDY67750.1	SDY39649.1	SAMN05444412_102201	SAMN05444412_10121	Surface antigen variable number repeat-containing protein.	AsmA-like C-terminal region.	0.536
SDY67750.1	SDY69047.1	SAMN05444412_102201	SAMN05444412_102252	Surface antigen variable number repeat-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.566
SDY67750.1	SDY72326.1	SAMN05444412_102201	SAMN05444412_102369	Surface antigen variable number repeat-containing protein.	Putative aminopeptidase FrvX.	0.586
SDY67750.1	SDY90993.1	SAMN05444412_102201	SAMN05444412_103363	Surface antigen variable number repeat-containing protein.	Peptidase family C25.	0.767
SDY67750.1	SDY98539.1	SAMN05444412_102201	SAMN05444412_104184	Surface antigen variable number repeat-containing protein.	Hypothetical protein.	0.775
SDY67750.1	SDZ00219.1	SAMN05444412_102201	SAMN05444412_104257	Surface antigen variable number repeat-containing protein.	Hypothetical protein.	0.771
SDY67750.1	SDZ04741.1	SAMN05444412_102201	SAMN05444412_10527	Surface antigen variable number repeat-containing protein.	Hypothetical protein.	0.496
SDY67750.1	SDZ51803.1	SAMN05444412_102201	SAMN05444412_11963	Surface antigen variable number repeat-containing protein.	Glycosyltransferase involved in cell wall bisynthesis.	0.677
SDY69047.1	SDY67750.1	SAMN05444412_102252	SAMN05444412_102201	Por secretion system C-terminal sorting domain-containing protein.	Surface antigen variable number repeat-containing protein.	0.566
SDY69047.1	SDY90993.1	SAMN05444412_102252	SAMN05444412_103363	Por secretion system C-terminal sorting domain-containing protein.	Peptidase family C25.	0.757
SDY69047.1	SDY97711.1	SAMN05444412_102252	SAMN05444412_104135	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.583
SDY69047.1	SDY98539.1	SAMN05444412_102252	SAMN05444412_104184	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.603
SDY69047.1	SDZ00219.1	SAMN05444412_102252	SAMN05444412_104257	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.705
SDY69047.1	SDZ51803.1	SAMN05444412_102252	SAMN05444412_11963	Por secretion system C-terminal sorting domain-containing protein.	Glycosyltransferase involved in cell wall bisynthesis.	0.447
SDY72326.1	SDY39649.1	SAMN05444412_102369	SAMN05444412_10121	Putative aminopeptidase FrvX.	AsmA-like C-terminal region.	0.583