STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY96003.123S rRNA pseudouridine955/2504/2580 synthase. (236 aa)    
Predicted Functional Partners:
SDY95983.1
LSU ribosomal protein L13P.
 
   0.933
SDY74784.1
LSU ribosomal protein L14P.
 
 
   0.864
SDZ00295.1
Ribosome-associated protein.
  
 
 0.861
SDY75261.1
LSU ribosomal protein L17P.
   
   0.855
SDZ57124.1
LSU ribosomal protein L21P.
   
   0.855
SDY74212.1
LSU ribosomal protein L11P.
    
   0.844
SDY75038.1
LSU ribosomal protein L15P.
  
   0.844
SDY74515.1
LSU ribosomal protein L3P.
   
   0.838
SDY74812.1
LSU ribosomal protein L24P.
   
   0.837
SDZ51768.1
tRNA modification GTPase trmE.
   
 
 0.824
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.