STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY96289.1Protein of unknown function. (415 aa)    
Predicted Functional Partners:
SDZ39262.1
PAS domain S-box-containing protein.
  
 0.903
SDY85052.1
PAS domain S-box-containing protein.
  
  0.891
SDZ04770.1
Hpt domain-containing protein.
  
  0.891
SDY62788.1
Condensin subunit ScpA.
  
 
 0.818
SDY96652.1
PAS domain S-box-containing protein.
  
 
  0.750
SDY52154.1
Hypothetical protein.
  
     0.734
SDZ55736.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.731
SDZ53517.1
Hypothetical protein.
  
     0.730
SDY99403.1
Hypothetical protein.
  
     0.729
SDZ44732.1
Signal transduction histidine kinase.
   
  0.728
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.