STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ07109.1Outer membrane protein beta-barrel domain-containing protein. (192 aa)    
Predicted Functional Partners:
SDZ49360.1
Outer membrane protein OmpA.
   
 0.720
SDY51158.1
Outer membrane protein OmpA.
   
 0.718
SDZ48975.1
Outer membrane porin, OprD family.
   
  0.677
SDZ49060.1
Hypothetical protein.
   
  0.677
SDZ43636.1
Hypothetical protein.
  
  
 0.667
SDZ28364.1
Outer membrane protein OmpA.
  
  0.658
SDZ39123.1
Protein of unknown function.
  
     0.650
SDY70321.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
  0.632
SDY67537.1
Peptidyl-prolyl cis-trans isomerase SurA.
   
 0.621
SDZ23223.1
Cytochrome c nitrite reductase small subunit.
  
   0.611
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.