STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ06040.1Alpha-1,3-rhamnosyltransferase. (316 aa)    
Predicted Functional Partners:
SDZ06054.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.919
SDZ00810.1
Glycosyl transferase family 2.
  
  
  0.811
SDZ41555.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.775
SDZ20388.1
Glycosyl transferase family 2.
  
     0.774
SDZ40613.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.774
SDZ06021.1
Deoxynucleoside kinase.
       0.773
SDZ55261.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.773
SDZ18397.1
Glycosyl transferase family 2.
  
     0.772
SDY41588.1
Glycosyl transferase family 2.
  
     0.771
SDZ55271.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.735
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.