STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ11844.1Ammonium transporter. (436 aa)    
Predicted Functional Partners:
SDY40240.1
Nitrogen regulatory protein P-II family.
 
 0.997
SDZ04770.1
Hpt domain-containing protein.
  
 0.797
SDY85052.1
PAS domain S-box-containing protein.
  
 0.777
SDY42325.1
Glutamate synthase (NADH) large subunit.
 
  
 0.723
SDZ39262.1
PAS domain S-box-containing protein.
  
 0.654
SDY90747.1
Signal transduction histidine kinase.
 
  
 0.641
SDZ44732.1
Signal transduction histidine kinase.
 
  
 0.618
SDZ11815.1
Putative beta-barrel porin-2, OmpL-like. bbp2.
 
     0.593
SDZ32547.1
PAS domain S-box-containing protein.
 
  
 0.592
SDY85289.1
ABC-type sugar transport system, substrate-binding protein, contains N-terminal xre family HTH domain.
 
  
 0.523
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.