STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ12582.1Galactokinase. (382 aa)    
Predicted Functional Partners:
SDZ12556.1
Aldose 1-epimerase.
 0.961
SDZ18110.1
UDP-galactose 4-epimerase.
 
 0.949
SDZ47131.1
Aldose 1-epimerase.
 0.949
SDY53341.1
Aldose 1-epimerase.
 0.938
SDZ06271.1
UDP-glucose 4-epimerase.
  
 0.935
SDZ13399.1
Protein of unknown function.
  
 0.777
SDZ43179.1
Hypothetical protein.
  
 0.765
SDZ12542.1
Transcriptional regulator, LacI family.
  
  
 0.663
SDZ14122.1
Beta-galactosidase.
 
  
 0.649
SDY49358.1
2'-5' RNA ligase.
 
  
  0.642
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.