STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ19564.1tRNA nucleotidyltransferase/poly(A) polymerase. (469 aa)    
Predicted Functional Partners:
SDY86262.1
Methylglyoxal synthase.
  
  
 0.822
SDZ53177.1
Polyribonucleotide nucleotidyltransferase.
   
 0.818
SDZ19790.1
Dihydrodipicolinate reductase.
  
    0.809
SDZ19589.1
Hypothetical protein.
       0.773
SDZ19609.1
Hypothetical protein.
       0.773
SDY42525.1
Ribonuclease G.
 
 
 0.750
SDZ19540.1
Tetratricopeptide repeat-containing protein.
       0.712
SDZ45373.1
Cell division protein FtsI (penicillin-binding protein 3).
 
   
 0.707
SDY75935.1
Ribonuclease P protein component.
  
 
  0.690
SDY96271.1
Protein of unknown function.
  
     0.677
Your Current Organism:
Rhodonellum ikkaensis
NCBI taxonomy Id: 336829
Other names: R. ikkaensis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.